Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent chaperone clpb | IZT61_05110 | Q89YY3 | + | 1279774 - 1282374 | 97830.9 |
| hypothetical protein | IZT61_05115 | Not Available | + | 1283140 - 1283793 | 24830.4 |
| mfs transporter | IZT61_05120 | P52067 | - | 1284122 - 1285324 | 43458.2 |
| nad(p)h-dependent oxidoreductase | IZT61_05125 | Q9I4D4 | + | 1285426 - 1285983 | 20167.6 |
| porin family protein | IZT61_05130 | Not Available | + | 1286336 - 1286938 | 21336.4 |
| hypothetical protein | IZT61_05135 | Not Available | + | 1287246 - 1288163 | 35809.8 |
| dmt family transporter | IZT61_05140 | Not Available | + | 1288283 - 1288812 | 18919.9 |
| hypothetical protein | IZT61_05145 | Not Available | + | 1288815 - 1288991 | 6446.84 |
| pepsy-like domain-containing protein | IZT61_05150 | Not Available | - | 1289084 - 1289527 | 16063.1 |
| voc family protein | IZT61_05155 | Not Available | + | 1289698 - 1290177 | 18234.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.