Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | IZT61_05010 | O34760 | + | 1248831 - 1249670 | 32026.6 |
| hypothetical protein | IZT61_05015 | Not Available | + | 1249781 - 1250140 | 13700.8 |
| ferritin | IZT61_05020 | Q49YT7 | + | 1250474 - 1251001 | 20606.4 |
| asparagine--trna ligase | IZT61_05025 | Q11Q97 | + | 1251832 - 1253280 | 55279.9 |
| atp-binding cassette domain-containing protein | IZT61_05030 | O31716 | + | 1253574 - 1255196 | 61211.7 |
| duf4397 domain-containing protein | IZT61_05035 | Not Available | + | 1255711 - 1256403 | 24841.9 |
| sigma-70 family rna polymerase sigma factor | IZT61_05040 | O07582 | + | 1256533 - 1257105 | 21899.3 |
| hypothetical protein | IZT61_05045 | Not Available | + | 1257098 - 1258381 | 47145.6 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | IZT61_05050 | P0A9L1 | - | 1258514 - 1259020 | 17886.7 |
| hypothetical protein | IZT61_05055 | Not Available | - | 1259434 - 1259889 | 17412.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.