Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pin domain nuclease | IZT61_04960 | Not Available | + | 1232200 - 1232607 | 15371.8 |
| phosphoribosylformylglycinamidine synthase | IZT61_04965 | Q9M8D3 | + | 1232787 - 1236482 | 134968.0 |
| energy transducer tonb | IZT61_04970 | Q9ZJP4 | - | 1236844 - 1237689 | 30887.5 |
| glutamine synthetase iii | IZT61_04975 | P15623 | + | 1237893 - 1240067 | 81046.9 |
| phosphoribosylformylglycinamidine cyclo-ligase | IZT61_04980 | Q57656 | + | 1240281 - 1241558 | 46644.4 |
| c-type cytochrome | IZT61_04985 | P33325 | + | 1241735 - 1242133 | 14821.2 |
| hypothetical protein | IZT61_04990 | Not Available | - | 1242386 - 1242667 | 10686.2 |
| hypothetical protein | IZT61_04995 | Not Available | + | 1242871 - 1243239 | 13487.4 |
| tonb-dependent receptor | IZT61_05000 | P38370 | - | 1243213 - 1246491 | 118824.0 |
| dihydrolipoyl dehydrogenase | IZT61_05005 | O05940 | + | 1247267 - 1248655 | 48747.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.