Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Novosphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Novosphingobium |
| Species | Novosphingobium humi |
| Strain | R1-4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Novosphingobium humi R1-4
Accession NumberCP117417.1
Gene Summary
Adenine Count
624047 bp
Thymine Count
625173 bp
Guanine Count
1097387 bp
Cytosine Count
1092600 bp
Genome Length
3439207 bp
Protein-coding Genes
3068 genes
Non-Coding Genes
159 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | PQ457_02435 | Not Available | - | 519234 - 519683 | 15971.8 |
| succinyl-diaminopimelate desuccinylase | PQ457_02440 | Q2GAU5 | + | 519783 - 520937 | 40652.9 |
| dicarboxylate/amino acid:cation symporter | PQ457_02445 | P58734 | + | 521011 - 522318 | 46381.7 |
| endonuclease iii | PQ457_02450 | P0AB84 | - | 522544 - 523194 | 24034.2 |
| 4-hydroxy-tetrahydrodipicolinate reductase | PQ457_02455 | Q5NPM9 | - | 523487 - 524215 | 25087.9 |
| bestrophin family ion channel | PQ457_02460 | Q98E66 | - | 524283 - 525170 | 32170.4 |
| hypothetical protein | PQ457_02465 | Not Available | - | 525179 - 525448 | 10017.2 |
| nad-dependent deacylase | PQ457_02470 | Q6MJJ2 | + | 525629 - 526336 | 25761.4 |
| n-6 dna methylase | PQ457_02475 | P25201 | + | 526336 - 526992 | 23584.4 |
| hypothetical protein | PQ457_02480 | P25201 | + | 526989 - 527846 | 30789.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.