Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Novosphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Novosphingobium |
| Species | Novosphingobium humi |
| Strain | R1-4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Novosphingobium humi R1-4
Accession NumberCP117417.1
Gene Summary
Adenine Count
624047 bp
Thymine Count
625173 bp
Guanine Count
1097387 bp
Cytosine Count
1092600 bp
Genome Length
3439207 bp
Protein-coding Genes
3068 genes
Non-Coding Genes
159 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-2-oxovalerate aldolase | PQ457_20595 | A5VGU4 | - | 1061426 - 1062451 | 36955.0 |
| acetaldehyde dehydrogenase (acetylating) | PQ457_20600 | A5VGU5 | - | 1062448 - 1063401 | 33454.7 |
| fumarylacetoacetate hydrolase family protein | PQ457_20605 | A7ZI97 | - | 1063407 - 1064189 | 27030.1 |
| iclr family transcriptional regulator | PQ457_20610 | P77732 | + | 1064274 - 1065032 | 26274.8 |
| pas domain s-box protein | PQ457_20615 | P23222 | - | 1065112 - 1066638 | 55572.6 |
| response regulator | PQ457_20620 | P26487 | - | 1066846 - 1067550 | 26209.6 |
| pas domain s-box protein | PQ457_20625 | P23222 | - | 1067543 - 1069393 | 68129.7 |
| chad domain-containing protein | PQ457_20630 | P30871 | + | 1070188 - 1071690 | 55469.1 |
| pas domain s-box protein | PQ457_20635 | P23222 | + | 1071904 - 1073691 | 65323.0 |
| rcnb family protein | PQ457_20640 | Not Available | + | 1073823 - 1074380 | 20885.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.