Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Novosphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Novosphingobium |
| Species | Novosphingobium humi |
| Strain | R1-4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Novosphingobium humi R1-4
Accession NumberCP117417.1
Gene Summary
Adenine Count
624047 bp
Thymine Count
625173 bp
Guanine Count
1097387 bp
Cytosine Count
1092600 bp
Genome Length
3439207 bp
Protein-coding Genes
3068 genes
Non-Coding Genes
159 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 39 protein | PQ457_20545 | Not Available | - | 1049912 - 1051531 | 57755.0 |
| tonb-dependent receptor | PQ457_20550 | P46359 | - | 1051672 - 1053897 | 79495.5 |
| fad-dependent oxidoreductase | PQ457_20555 | Q7N4V5 | - | 1054121 - 1055350 | 42253.7 |
| 3-carboxyethylcatechol 2,3-dioxygenase | PQ457_20560 | Q7N4V6 | - | 1055347 - 1056306 | 34627.5 |
| 3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase | PQ457_20565 | B7M7P4 | - | 1056303 - 1057115 | 28259.9 |
| bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit | PQ457_20570 | Q0T1X9 | - | 1057112 - 1057429 | 11203.1 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit beta | PQ457_20575 | Q7N4V9 | - | 1057447 - 1057992 | 21131.9 |
| aromatic ring-hydroxylating dioxygenase subunit alpha | PQ457_20580 | P0ABR6 | - | 1057985 - 1059346 | 50729.7 |
| lysr substrate-binding domain-containing protein | PQ457_20585 | Q47141 | + | 1059474 - 1060364 | 32859.9 |
| alpha/beta fold hydrolase | PQ457_20590 | Q476M7 | + | 1060523 - 1061383 | 31054.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.