Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Novosphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Novosphingobium |
| Species | Novosphingobium humi |
| Strain | R1-4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Novosphingobium humi R1-4
Accession NumberCP117417.1
Gene Summary
Adenine Count
624047 bp
Thymine Count
625173 bp
Guanine Count
1097387 bp
Cytosine Count
1092600 bp
Genome Length
3439207 bp
Protein-coding Genes
3068 genes
Non-Coding Genes
159 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system pard family antitoxin | PQ457_19395 | Q9A458 | + | 780989 - 781234 | 8969.56 |
| type ii toxin-antitoxin system rele/pare family toxin | PQ457_19400 | Q9A459 | + | 781237 - 781539 | 11303.3 |
| yegp family protein | PQ457_19405 | Not Available | - | 781900 - 782268 | 13382.5 |
| hypothetical protein | PQ457_19410 | Not Available | + | 782588 - 782773 | 6552.68 |
| hypothetical protein | PQ457_19415 | Not Available | + | 782770 - 782991 | 8091.8 |
| spermidine synthase | PQ457_19420 | Q7TY95 | - | 783053 - 783742 | 24753.4 |
| yaii/yqxd family protein | PQ457_19425 | Q1GQI7 | - | 783742 - 784236 | 17026.5 |
| cold-shock protein | PQ457_19430 | P55390 | + | 784567 - 784773 | 7423.74 |
| mbl fold metallo-hydrolase | PQ457_19435 | P28607 | - | 785000 - 786070 | 37857.2 |
| duf6379 domain-containing protein | PQ457_19440 | Not Available | - | 786192 - 786596 | 15121.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.