Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Novosphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Novosphingobium |
| Species | Novosphingobium humi |
| Strain | R1-4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Novosphingobium humi R1-4
Accession NumberCP117417.1
Gene Summary
Adenine Count
624047 bp
Thymine Count
625173 bp
Guanine Count
1097387 bp
Cytosine Count
1092600 bp
Genome Length
3439207 bp
Protein-coding Genes
3068 genes
Non-Coding Genes
159 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | PQ457_18595 | P46359 | - | 606796 - 609009 | 79559.0 |
| hypothetical protein | PQ457_18600 | Not Available | + | 609142 - 609351 | 7395.79 |
| hypothetical protein | PQ457_18605 | Not Available | - | 609348 - 609554 | 7333.16 |
| lytic transglycosylase domain-containing protein | PQ457_18610 | Q07568 | - | 609643 - 610101 | 16975.1 |
| restriction endonuclease | PQ457_18615 | Not Available | - | 610146 - 610547 | 14624.9 |
| mobf family relaxase | PQ457_18620 | P14565 | - | 610734 - 613688 | 109308.0 |
| type iv secretion system dna-binding domain-containing protein | PQ457_18625 | P22708 | - | 613685 - 615778 | 77656.1 |
| copg family transcriptional regulator | PQ457_18630 | Not Available | - | 615775 - 616074 | 10801.1 |
| tyrosine-type recombinase/integrase | PQ457_18635 | P9WMB2 | + | 616725 - 617912 | 43121.3 |
| site-specific integrase | PQ457_18640 | B7IFN3 | + | 617905 - 619173 | 46820.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.