Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Novosphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Novosphingobium |
| Species | Novosphingobium humi |
| Strain | R1-4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Novosphingobium humi R1-4
Accession NumberCP117417.1
Gene Summary
Adenine Count
624047 bp
Thymine Count
625173 bp
Guanine Count
1097387 bp
Cytosine Count
1092600 bp
Genome Length
3439207 bp
Protein-coding Genes
3068 genes
Non-Coding Genes
159 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lps export abc transporter periplasmic protein lptc | PQ457_15190 | Not Available | + | 3245486 - 3246133 | 23285.3 |
| lpta/osta family protein | PQ457_15195 | P25893 | + | 3246175 - 3246768 | 20666.3 |
| gdp-mannose 4,6-dehydratase | PQ457_15200 | O85713 | + | 3246969 - 3248048 | 40694.4 |
| gdp-l-fucose synthase | PQ457_15205 | P55353 | + | 3248060 - 3248989 | 33774.7 |
| wcai family glycosyltransferase | PQ457_15210 | P32057 | + | 3248989 - 3250245 | 45398.4 |
| oligosaccharide flippase family protein | PQ457_15215 | Q99191 | + | 3250248 - 3251660 | 50901.8 |
| acyltransferase | PQ457_15220 | Q5HCZ5 | + | 3251685 - 3252449 | 28221.1 |
| nad(p)-dependent oxidoreductase | PQ457_15225 | Q9HTB6 | + | 3252514 - 3253479 | 34563.6 |
| glycosyltransferase | PQ457_15230 | Not Available | + | 3253476 - 3254654 | 43846.8 |
| hypothetical protein | PQ457_15235 | Not Available | + | 3254786 - 3255211 | 14491.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.