Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Novosphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Novosphingobium |
| Species | Novosphingobium humi |
| Strain | R1-4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Novosphingobium humi R1-4
Accession NumberCP117417.1
Gene Summary
Adenine Count
624047 bp
Thymine Count
625173 bp
Guanine Count
1097387 bp
Cytosine Count
1092600 bp
Genome Length
3439207 bp
Protein-coding Genes
3068 genes
Non-Coding Genes
159 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c maturation protein ccme | PQ457_05935 | Q2G8J0 | + | 1310447 - 1310893 | 15960.5 |
| heme lyase ccmf/nrfe family subunit | PQ457_05940 | P45404 | + | 1310906 - 1312915 | 71370.3 |
| dsbe family thiol:disulfide interchange protein | PQ457_05945 | Q8ZD52 | + | 1312912 - 1313463 | 19878.2 |
| cytochrome c-type biogenesis protein ccmh | PQ457_05950 | P45406 | + | 1313463 - 1313882 | 15297.4 |
| cytochrome c biosynthesis protein | PQ457_05955 | P45399 | + | 1313879 - 1314586 | 24799.3 |
| potassium transporter kup | PQ457_05960 | Q2G8I5 | + | 1314793 - 1316613 | 65640.1 |
| superoxide dismutase | PQ457_05965 | Q92HJ3 | + | 1316748 - 1317368 | 22571.3 |
| septation protein ispz | PQ457_05970 | Q92L49 | - | 1317595 - 1318239 | 23854.6 |
| signal recognition particle-docking protein ftsy | PQ457_05975 | A9CHH2 | - | 1318236 - 1319165 | 32351.9 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | PQ457_05980 | Q9ZDB6 | - | 1319162 - 1320334 | 41916.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.