Kingdom
Pseudomonadati
Phylum
Calditrichota
Class
Calditrichia
Order
Calditrichales
Family
Calditrichaceae
Genus
Caldithrix
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Calditrichota |
| Class | Calditrichia |
| Order | Calditrichales |
| Family | Calditrichaceae |
| Genus | Caldithrix |
| Species | Caldithrix abyssi |
| Strain | LF13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Caldithrix abyssi LF13
Accession NumberCP018099.1
Gene Summary
Adenine Count
1364352 bp
Thymine Count
1369075 bp
Guanine Count
1122865 bp
Cytosine Count
1122249 bp
Genome Length
4978541 bp
Protein-coding Genes
4204 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| two-component system, ntrc family, response regulator | Cabys_691 | Q06065 | - | 800344 - 801723 | 51833.7 |
| his kinase a (phospho-acceptor) domain-containing protein | Cabys_692 | Q9APE0 | - | 801720 - 803726 | 76599.4 |
| dna-binding transcriptional regulator, acrr family | Cabys_693 | P94548 | + | 803917 - 804498 | 22355.5 |
| ahpc/tsa family protein | Cabys_694 | Not Available | + | 805050 - 805523 | 18150.1 |
| ppgpp synthetase catalytic domain-containing protein (rela/spot-type nucleotidyltransferase) | Cabys_695 | P39583 | + | 805545 - 806636 | 42274.4 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | Cabys_696 | P45030 | + | 806644 - 807444 | 29471.2 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | Cabys_697 | Q3A9G5 | + | 807455 - 808180 | 27004.2 |
| abc-type transporter mla maintaining outer membrane lipid asymmetry, component mlad | Cabys_698 | Not Available | + | 808188 - 809150 | 34840.4 |
| hypothetical protein | Cabys_699 | Not Available | + | 809183 - 809545 | 13116.9 |
| protein of unknown function (duf3943) | Cabys_700 | Not Available | + | 809611 - 810936 | 50484.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.