Kingdom
Pseudomonadati
Phylum
Calditrichota
Class
Calditrichia
Order
Calditrichales
Family
Calditrichaceae
Genus
Caldithrix
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Calditrichota |
| Class | Calditrichia |
| Order | Calditrichales |
| Family | Calditrichaceae |
| Genus | Caldithrix |
| Species | Caldithrix abyssi |
| Strain | LF13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Caldithrix abyssi LF13
Accession NumberCP018099.1
Gene Summary
Adenine Count
1364352 bp
Thymine Count
1369075 bp
Guanine Count
1122865 bp
Cytosine Count
1122249 bp
Genome Length
4978541 bp
Protein-coding Genes
4204 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hamp domain-containing protein | Cabys_3191 | P23545 | - | 3801109 - 3802584 | 55719.9 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | Cabys_3192 | P13792 | - | 3802581 - 3803396 | 31325.2 |
| spondin_n | Cabys_3193 | Not Available | - | 3803417 - 3804172 | 27101.5 |
| peptidase t, metallo peptidase, merops family m20b | Cabys_3194 | B8CWQ0 | + | 3804403 - 3805653 | 46304.3 |
| duf971 family protein | Cabys_3195 | Not Available | + | 3805803 - 3806153 | 13371.0 |
| Trna-thr | Not Available | Not Available | + | 3806249 - 3806321 | Not Available |
| endonuclease, uma2 family (restriction endonuclease fold) | Cabys_3196 | P73844 | + | 3806503 - 3807084 | 22955.8 |
| 2-isopropylmalate synthase | Cabys_3197 | Q9WZ22 | - | 3807441 - 3809051 | 59519.6 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase small subunit | Cabys_3198 | Q9ZW85 | - | 3809078 - 3809731 | 24040.7 |
| 3-isopropylmalate dehydratase, large subunit | Cabys_3199 | Q94AR8 | - | 3809898 - 3811196 | 47379.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.