Kingdom
Pseudomonadati
Phylum
Calditrichota
Class
Calditrichia
Order
Calditrichales
Family
Calditrichaceae
Genus
Caldithrix
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Calditrichota |
| Class | Calditrichia |
| Order | Calditrichales |
| Family | Calditrichaceae |
| Genus | Caldithrix |
| Species | Caldithrix abyssi |
| Strain | LF13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1364352 bp
Thymine Count
1369075 bp
Guanine Count
1122865 bp
Cytosine Count
1122249 bp
Genome Length
4978541 bp
Protein-coding Genes
4204 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| two component transcriptional regulator, winged helix family | Cabys_1417 | P37478 | - | 1715819 - 1716505 | 26639.2 |
| signal transduction histidine kinase | Cabys_1418 | P23545 | - | 1716502 - 1717506 | 39079.4 |
| hypothetical protein | Cabys_1419 | Not Available | + | 1717490 - 1717606 | 4767.88 |
| radical sam superfamily enzyme ygiq, upf0313 family | Cabys_1420 | P42349 | + | 1717603 - 1719084 | 56385.0 |
| dna-binding regulatory protein, yebc/pmpr family | Cabys_1421 | C0QT62 | + | 1719317 - 1720072 | 28290.5 |
| ruvc holliday junction endonuclease ruvc | Cabys_1422 | Q0AX14 | + | 1720079 - 1720558 | 17337.3 |
| ruva holliday junction dna helicase subunit ruva | Cabys_1423 | A4VNA4 | + | 1720568 - 1721167 | 21622.3 |
| ruvb holliday junction dna helicase subunit ruvb | Cabys_1424 | A0LGY6 | + | 1721173 - 1722192 | 38105.3 |
| quea s-adenosylmethionine--trna ribosyltransferase-isomerase | Cabys_1425 | B0K958 | + | 1722216 - 1723247 | 38871.8 |
| 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | Cabys_1426 | Q92F39 | + | 1723263 - 1723664 | 14530.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.