Kingdom
Pseudomonadati
Phylum
Calditrichota
Class
Calditrichia
Order
Calditrichales
Family
Calditrichaceae
Genus
Caldithrix
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Calditrichota |
| Class | Calditrichia |
| Order | Calditrichales |
| Family | Calditrichaceae |
| Genus | Caldithrix |
| Species | Caldithrix abyssi |
| Strain | LF13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Caldithrix abyssi LF13
Accession NumberCP018099.1
Gene Summary
Adenine Count
1364352 bp
Thymine Count
1369075 bp
Guanine Count
1122865 bp
Cytosine Count
1122249 bp
Genome Length
4978541 bp
Protein-coding Genes
4204 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase primary sigma factor | Cabys_1188 | P33656 | + | 1407402 - 1408247 | 32361.9 |
| peptidase family m23 | Cabys_1189 | P44693 | + | 1408369 - 1409316 | 36020.8 |
| poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) | Cabys_1190 | P19579 | + | 1409461 - 1410345 | 33714.5 |
| gatc aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit c | Cabys_1191 | B5YHS7 | + | 1410579 - 1410872 | 11228.4 |
| kdsb 3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase) | Cabys_1192 | B3EAK6 | + | 1410869 - 1411624 | 28630.5 |
| pyrg ctp synthase | Cabys_1193 | Q0TNA4 | + | 1411627 - 1413240 | 60384.0 |
| diguanylate cyclase, ggdef domain | Cabys_1194 | Q8EGF8 | + | 1413587 - 1414567 | 37578.8 |
| hypothetical protein | Cabys_1195 | Not Available | + | 1414668 - 1415642 | 39583.1 |
| beta-phosphoglucomutase | Cabys_1196 | Q15JF8 | + | 1415709 - 1416359 | 25012.2 |
| cold shock protein (beta-ribbon, cspa family) | Cabys_1197 | Q5X9L4 | - | 1416451 - 1416657 | 7710.14 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.