Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-2 | PQ455_02170 | A5VCZ5 | + | 429016 - 431640 | 93352.2 |
| hypothetical protein | PQ455_02175 | Not Available | + | 431662 - 431826 | 5920.68 |
| 30s ribosome-binding factor rbfa | PQ455_02180 | A5VCZ4 | + | 431984 - 432403 | 15392.5 |
| hypothetical protein | PQ455_02185 | Not Available | + | 432400 - 432897 | 17524.1 |
| trna pseudouridine(55) synthase trub | PQ455_02190 | Q2G5F3 | + | 433418 - 434452 | 35288.6 |
| 30s ribosomal protein s15 | PQ455_02195 | A5VCY8 | + | 434449 - 434718 | 10152.5 |
| polyribonucleotide nucleotidyltransferase | PQ455_02200 | A5VCY9 | + | 435002 - 437329 | 83789.4 |
| duf899 family protein | PQ455_02205 | Not Available | + | 437558 - 438268 | 26306.0 |
| gamma-glutamyltransferase | PQ455_02210 | P54422 | - | 438352 - 440007 | 57457.8 |
| helix-turn-helix domain containing protein | PQ455_02215 | O08335 | - | 440138 - 440683 | 19807.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.