Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | PQ455_03120 | P39045 | + | 658230 - 659672 | 49732.5 |
| membrane-bound pqq-dependent dehydrogenase, glucose/quinate/shikimate family | PQ455_03125 | Q70JN9 | + | 659849 - 662248 | 85558.0 |
| hypothetical protein | PQ455_03130 | Not Available | - | 662321 - 662602 | 9041.32 |
| vacj family lipoprotein | PQ455_03135 | Q1RGV2 | - | 662705 - 663682 | 33178.2 |
| metalloregulator arsr/smtb family transcription factor | PQ455_03140 | P15905 | + | 663762 - 664715 | 33943.9 |
| methylenetetrahydrofolate reductase | PQ455_03145 | P71319 | + | 664712 - 665656 | 34089.7 |
| homocysteine s-methyltransferase family protein | PQ455_03150 | O33465 | + | 665668 - 666726 | 37887.4 |
| methionine synthase | PQ455_03155 | P13009 | + | 666842 - 669493 | 96491.7 |
| 3-isopropylmalate dehydrogenase | PQ455_03160 | Q2G4X5 | + | 669664 - 670707 | 36505.0 |
| serine hydrolase | PQ455_03165 | P15555 | - | 670713 - 672128 | 50356.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.