Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| copper resistance protein copc | PQ455_02320 | Q56797 | - | 466140 - 466514 | 12456.3 |
| peptidase s10 | PQ455_02325 | Not Available | - | 466514 - 468079 | 57247.8 |
| monofunctional biosynthetic peptidoglycan transglycosylase | PQ455_02330 | Q9ABA6 | + | 468180 - 468914 | 27289.3 |
| log family protein | PQ455_02335 | Q8L8B8 | - | 469145 - 470056 | 33721.4 |
| extensin family protein | PQ455_02340 | Not Available | - | 470094 - 470735 | 22970.7 |
| duf4345 domain-containing protein | PQ455_02345 | Not Available | - | 470767 - 471186 | 15167.9 |
| duf2721 domain-containing protein | PQ455_02350 | Not Available | - | 471183 - 471662 | 17352.1 |
| ll-diaminopimelate aminotransferase | PQ455_02355 | O87320 | - | 471674 - 472882 | 43859.7 |
| class i poly(r)-hydroxyalkanoic acid synthase | PQ455_02360 | O66392 | + | 473122 - 474795 | 61517.2 |
| phasin family protein | PQ455_02365 | Not Available | + | 475002 - 475826 | 27834.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.