Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | PQ455_19050 | Q8CWA2 | + | 26204 - 27703 | 51687.3 |
| efflux rnd transporter permease subunit | PQ455_19055 | Q8FK36 | + | 27700 - 30837 | 112358.0 |
| copper-binding protein | PQ455_19060 | Q8XBY2 | + | 30837 - 31163 | 10926.5 |
| glutaredoxin family protein | PQ455_19065 | P44758 | - | 31185 - 31952 | 27974.7 |
| merr family dna-binding protein | PQ455_19070 | P13111 | + | 32016 - 32420 | 14443.2 |
| cdf family co(ii)/ni(ii) efflux transporter dmef | PQ455_19075 | P75757 | - | 32417 - 33361 | 33082.8 |
| metal/formaldehyde-sensitive transcriptional repressor | PQ455_19080 | P55757 | - | 33372 - 33647 | 9727.62 |
| duf3459 domain-containing protein | PQ455_19085 | O34364 | - | 33798 - 34250 | 16684.9 |
| response regulator | PQ455_19090 | Q2YIF7 | + | 34284 - 34610 | 12155.6 |
| duf159 family protein | PQ455_19095 | Not Available | - | 34706 - 36049 | 48968.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.