Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ethd family reductase | PQ455_16510 | Not Available | + | 3430645 - 3430938 | 10375.3 |
| hypothetical protein | PQ455_16515 | Not Available | - | 3430945 - 3431781 | 30258.8 |
| anhydro-n-acetylmuramic acid kinase | PQ455_16520 | A5V6F9 | - | 3431831 - 3432904 | 36455.7 |
| tyrosine--trna ligase | PQ455_16525 | Q2G6I4 | + | 3433008 - 3434240 | 45212.5 |
| response regulator transcription factor | PQ455_16530 | A8R3T0 | - | 3434270 - 3434929 | 23803.9 |
| methanol/ethanol family pqq-dependent dehydrogenase | PQ455_16535 | Q9Z4J7 | - | 3435055 - 3436803 | 62551.1 |
| transporter substrate-binding domain-containing protein | PQ455_16540 | Q01269 | - | 3436926 - 3437771 | 29714.8 |
| cytochrome c-550 pedf | PQ455_16545 | Q9I2C5 | - | 3437780 - 3438211 | 15304.3 |
| pqq-dependent catabolism-associated beta-propeller protein | PQ455_16550 | Not Available | + | 3438359 - 3439318 | 33662.3 |
| porin | PQ455_16555 | Not Available | + | 3439411 - 3440811 | 48620.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.