Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | PQ455_11560 | Q7CQE0 | - | 2411868 - 2412491 | 20790.3 |
| malonic semialdehyde reductase | PQ455_11565 | Q8P4V1 | - | 2412495 - 2413100 | 21834.0 |
| nifu family protein | PQ455_11570 | Q9C8J2 | - | 2413129 - 2413701 | 20308.0 |
| tyrosine recombinase | PQ455_11575 | Q2NB52 | - | 2413733 - 2414635 | 32915.4 |
| hypothetical protein | PQ455_11580 | Not Available | - | 2414751 - 2416544 | 62001.2 |
| hypothetical protein | PQ455_11585 | Not Available | - | 2416558 - 2416692 | 4426.55 |
| shikimate kinase | PQ455_11590 | Q9A435 | + | 2416838 - 2417320 | 17616.4 |
| 3-dehydroquinate synthase | PQ455_11595 | Q5NPY8 | + | 2417317 - 2418417 | 37585.4 |
| tcr/tet family mfs transporter | PQ455_11600 | P02982 | + | 2418639 - 2419886 | 43598.3 |
| duf3089 domain-containing protein | PQ455_11605 | Not Available | - | 2419985 - 2421121 | 41169.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.