Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribbon-helix-helix protein, copg family | PQ455_10660 | P55533 | + | 2241410 - 2241664 | 9184.91 |
| type ii toxin-antitoxin system rele/pare family toxin | PQ455_10665 | Q9A5D7 | + | 2241664 - 2241951 | 10858.8 |
| nicotinate-nucleotide adenylyltransferase | PQ455_10670 | Q2N6F4 | + | 2241948 - 2242607 | 25045.6 |
| ribosome silencing factor | PQ455_10675 | Q5NLX3 | + | 2242628 - 2242993 | 13099.6 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | PQ455_10680 | A5V9D8 | + | 2243000 - 2243422 | 15747.0 |
| peptidoglycan dd-metalloendopeptidase family protein | PQ455_10685 | P37690 | + | 2243422 - 2244609 | 40982.6 |
| hemerythrin domain-containing protein | PQ455_10690 | Q8YS92 | + | 2244706 - 2245266 | 20836.5 |
| m20/m25/m40 family metallo-hydrolase | PQ455_10695 | Q17QK3 | + | 2245423 - 2247036 | 58440.1 |
| ribonuclease t | PQ455_10700 | P44012 | - | 2247091 - 2247801 | 26102.7 |
| carboxylating nicotinate-nucleotide diphosphorylase | PQ455_10705 | P77938 | - | 2247839 - 2248681 | 29221.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.