Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| omph family outer membrane protein | PQ455_07605 | Not Available | - | 1601403 - 1602026 | 21367.6 |
| outer membrane protein assembly factor bama | PQ455_07610 | C6V5K2 | - | 1602026 - 1604650 | 96920.7 |
| rip metalloprotease rsep | PQ455_07615 | Q8UFL7 | - | 1604785 - 1605912 | 40862.4 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | PQ455_07620 | Q9X5F2 | - | 1605912 - 1607066 | 40014.5 |
| phosphatidate cytidylyltransferase | PQ455_07625 | Q8YHH2 | - | 1607069 - 1607851 | 26303.1 |
| isoprenyl transferase | PQ455_07630 | Q9X5F1 | - | 1607853 - 1608521 | 24645.5 |
| ribosome recycling factor | PQ455_07635 | A5V3G5 | - | 1608608 - 1609165 | 20508.7 |
| ump kinase | PQ455_07640 | A5V3G4 | - | 1609192 - 1609914 | 25273.8 |
| translation elongation factor ts | PQ455_07645 | A5V3G3 | - | 1610053 - 1610976 | 31609.8 |
| 30s ribosomal protein s2 | PQ455_07650 | A5V3G2 | - | 1611092 - 1611844 | 26921.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.