Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas naphthae |
| Strain | DKC-5-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas naphthae DKC-5-1
Accession NumberCP117411.1
Gene Summary
Adenine Count
633777 bp
Thymine Count
632940 bp
Guanine Count
1323979 bp
Cytosine Count
1329131 bp
Genome Length
3919827 bp
Protein-coding Genes
3655 genes
Non-Coding Genes
124 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| virb3 family type iv secretion system protein | PQ455_05420 | P55397 | - | 1147318 - 1147599 | 10046.3 |
| trbc/virb2 family protein | PQ455_05425 | P54908 | - | 1147596 - 1147931 | 11430.2 |
| p-type conjugative transfer atpase trbb | PQ455_05430 | P55395 | - | 1147928 - 1148914 | 34749.1 |
| hypothetical protein | PQ455_05435 | Not Available | + | 1149143 - 1149961 | 28581.7 |
| hypothetical protein | PQ455_05440 | Not Available | + | 1149958 - 1150419 | 17724.2 |
| ribbon-helix-helix domain-containing protein | PQ455_05445 | Not Available | - | 1150402 - 1150827 | 15862.9 |
| conjugal transfer protein trag | PQ455_05450 | Q00185 | - | 1150837 - 1152810 | 72139.4 |
| duf3363 domain-containing protein | PQ455_05455 | Not Available | - | 1152825 - 1154576 | 63692.0 |
| lytic transglycosylase domain-containing protein | PQ455_05460 | O31608 | - | 1154815 - 1155726 | 31409.2 |
| duf736 domain-containing protein | PQ455_05465 | P55425 | - | 1155731 - 1156063 | 12289.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.