Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes senegalensis |
| Strain | JC50 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Alistipes senegalensis JC50
Accession NumberCP102252.1
Gene Summary
Adenine Count
843355 bp
Thymine Count
833767 bp
Guanine Count
1170539 bp
Cytosine Count
1175536 bp
Genome Length
4023197 bp
Protein-coding Genes
3164 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s13 | LK406_10345 | Q5L8D3 | + | 2530132 - 2530512 | 14079.4 |
| 30s ribosomal protein s11 | LK406_10350 | B2RLW7 | + | 2530526 - 2530915 | 13786.8 |
| 30s ribosomal protein s4 | LK406_10355 | A6LEG6 | + | 2530967 - 2531575 | 22786.5 |
| dna-directed rna polymerase subunit alpha | LK406_10360 | A6KYH0 | + | 2531597 - 2532589 | 36994.8 |
| 50s ribosomal protein l17 | LK406_10365 | B2RLW4 | + | 2532594 - 2533205 | 22021.9 |
| susc/raga family tonb-linked outer membrane protein | LK406_10370 | T2KM18 | + | 2533552 - 2536563 | 112344.0 |
| ragb/susd family nutrient uptake outer membrane protein | LK406_10375 | T2KNB8 | + | 2536582 - 2538039 | 54590.6 |
| duf4843 domain-containing protein | LK406_10380 | Not Available | + | 2538048 - 2538854 | 29809.9 |
| hypothetical protein | LK406_10385 | Not Available | + | 2538868 - 2540397 | 57192.8 |
| zinc-dependent metalloprotease | LK406_10390 | Not Available | + | 2540419 - 2543019 | 97976.6 |
Pathways
1348 pathways
2,3-Dihydroxybenzoate Biosynthesis
2,3-Dihydroxybenzoate Biosynthesis
Biosynthesis of Siderophore Group Nonribosomal Peptides
Biosynthesis of Siderophore Group Nonribosomal Peptides
Glycolysis and Pyruvate Dehydrogenase
Glycolysis and Pyruvate Dehydrogenase
Palmitate Biosynthesis
Palmitate Biosynthesis
Fatty Acid Elongation (Saturated)
Fatty Acid Elongation (Saturated)
tRNA Charging
tRNA Charging
Galactose Degradation/Leloir Pathway
Galactose Degradation/Leloir Pathway
Adenosylcobalamin Salvage from Cobinamide
Adenosylcobalamin Salvage from Cobinamide