Acidobacterium capsulatum ATCC 51196

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Acidobacteriota

Class

Terriglobia

Order

Terriglobales

Family

Acidobacteriaceae

Genus

Acidobacterium

Description

Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) is an aerobic, mesophilic, chemo-organotroph bacterium isolated from acidic mine drainage in Yanahara mine, Okayama, Japan. A. capsulatum is able to use a variety of carbon sources that span simple sugars to more complex substrates such as hemicellulose, cellulose, and chitin. It is capable of nitrate and nitrite reduction, but not N2 fixation or denitrification. It plays an important role in iron redox reactions and important contributions to the terrestrial carbon cycle. The presence of cellulose synthesis genes and a large class of novel high-molecular-weight excreted proteins suggests potential traits for desiccation resistance, biofilm formation, and/or contribution to soil structure. (adapated from PMID: 19201974). (HAMAP: ACIC5)

Taxonomy

KingdomPseudomonadati
PhylumAcidobacteriota
ClassTerriglobia
OrderTerriglobales
FamilyAcidobacteriaceae
GenusAcidobacterium
SpeciesAcidobacterium capsulatum
StrainATCC 51196

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Acidobacterium capsulatum ATCC 51196
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph- Chemoorganotroph
PathogenicityNo

Genome Summary

Acidobacterium capsulatum ATCC 51196

Accession NumberNC_012483.1

Gene Summary

Adenine Count

817774 bp

Thymine Count

812655 bp

Guanine Count

1242334 bp

Cytosine Count

1254593 bp

Genome Length

4127356 bp

Protein-coding Genes

3343 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdACP_RS16320O66534+3959622 - 396076440815.3
riboflavin synthaseACP_RS16325P50854+3960814 - 396147322873.6
pyridoxal-phosphate dependent enzymeACP_RS16330Not Available-3961486 - 396255336851.4
menaquinone biosynthetic enzyme mqna/mqnd family proteinACP_RS16335Not Available-3962626 - 396348631524.8
dna-processing protein dpraACP_RS16340P30852+3963867 - 396507242590.3
type i dna topoisomeraseACP_RS16345Q9KA23+3965247 - 396788398846.0
type ii toxin-antitoxin system relb/dinj family antitoxinACP_RS16350A0A140ND86+3967993 - 396830111491.9
type ii toxin-antitoxin system mrna interferase toxin, rele/stbe familyACP_RS16355Not Available+3968305 - 396858310508.8
hypothetical proteinACP_RS16360Not Available+3968638 - 396907817082.6
duf427 domain-containing proteinACP_RS16365Not Available+3969180 - 396946410785.6

Displaying genes 3271 – 3280 of 3395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

228 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 228 metabolites