Acidobacterium capsulatum ATCC 51196

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Acidobacteriota

Class

Terriglobia

Order

Terriglobales

Family

Acidobacteriaceae

Genus

Acidobacterium

Description

Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) is an aerobic, mesophilic, chemo-organotroph bacterium isolated from acidic mine drainage in Yanahara mine, Okayama, Japan. A. capsulatum is able to use a variety of carbon sources that span simple sugars to more complex substrates such as hemicellulose, cellulose, and chitin. It is capable of nitrate and nitrite reduction, but not N2 fixation or denitrification. It plays an important role in iron redox reactions and important contributions to the terrestrial carbon cycle. The presence of cellulose synthesis genes and a large class of novel high-molecular-weight excreted proteins suggests potential traits for desiccation resistance, biofilm formation, and/or contribution to soil structure. (adapated from PMID: 19201974). (HAMAP: ACIC5)

Taxonomy

KingdomPseudomonadati
PhylumAcidobacteriota
ClassTerriglobia
OrderTerriglobales
FamilyAcidobacteriaceae
GenusAcidobacterium
SpeciesAcidobacterium capsulatum
StrainATCC 51196

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Acidobacterium capsulatum ATCC 51196
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph- Chemoorganotroph
PathogenicityNo

Genome Summary

Acidobacterium capsulatum ATCC 51196

NC_012483.1

Gene Summary

Adenine Count

817774 bp

Thymine Count

812655 bp

Guanine Count

1242334 bp

Cytosine Count

1254593 bp

Genome Length

4127356 bp

Protein-coding Genes

3343 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
class i sam-dependent methyltransferaseACP_RS06755A7MQL7-1688119 - 168869722005.2
duf2892 domain-containing proteinACP_RS06760Not Available-1688699 - 16889117934.87
efflux rnd transporter permease subunitACP_RS06765Not Available-1688922 - 1692179118831.0
efflux rnd transporter periplasmic adaptor subunitACP_RS06770Not Available-1692191 - 169331239085.3
tolc family proteinACP_RS06775Not Available-1693309 - 169468850494.5
sigma-70 family rna polymerase sigma factorACP_RS06780Not Available-1694748 - 169567434581.7
carboxylesterase/lipase family proteinACP_RS06785D2D3B6-1695801 - 169733955420.8
alpha/beta fold hydrolaseACP_RS06790Not Available-1697524 - 169895752264.5
tetr/acrr family transcriptional regulatorACP_RS06795Not Available+1699119 - 169970320859.1
50s ribosomal protein l17ACP_RS06800C1F613-1699779 - 170026118170.7

Displaying genes 1351 – 1360 of 3395 in total

Metabolites

1860 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 1860 metabolites