Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | FAP39_15820 | Not Available | + | 3251245 - 3251793 | 19452.0 |
| Hypothetical protein | FAP39_15825 | Not Available | - | 3251786 - 3251995 | 7841.82 |
| Dna methylase | FAP39_15830 | Not Available | - | 3251992 - 3253254 | 45972.2 |
| Dna polymerase | FAP39_15835 | Not Available | - | 3253771 - 3255039 | 46678.6 |
| Protein umud | FAP39_15840 | Not Available | - | 3255036 - 3255470 | 15844.9 |
| 5s ribosomal rna | Not Available | Not Available | + | 173 - 287 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | + | 392 - 3236 | Not Available |
| hypothetical protein | FAP39_00005 | Not Available | + | 464 - 1126 | 24449.9 |
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | FAP39_00010 | Not Available | - | 1164 - 1928 | 26144.8 |
| hesa/moeb/thif family protein | FAP39_00015 | Not Available | - | 1925 - 2893 | 34300.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.