Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| elongation factor tu | FAP39_17335 | Not Available | + | 3555631 - 3556806 | 42741.1 |
| acyltransferase | FAP39_17345 | Not Available | + | 3558477 - 3559169 | 25893.0 |
| integrase | FAP39_17350 | Not Available | + | 3559544 - 3560176 | 23979.5 |
| hypothetical protein | FAP39_17355 | Not Available | - | 3560440 - 3560685 | 9189.62 |
| hypothetical protein | FAP39_17360 | Not Available | + | 3560888 - 3561214 | 11630.9 |
| porin | FAP39_17365 | Not Available | + | 3561340 - 3562239 | 30531.1 |
| abc transporter atp-binding protein | FAP39_17370 | Not Available | - | 3562363 - 3563154 | 29724.4 |
| is6 family transposase | FAP39_17375 | Not Available | - | 3563224 - 3563910 | 25775.5 |
| helix-turn-helix transcriptional regulator | FAP39_17380 | Not Available | - | 3564106 - 3564600 | 18407.4 |
| hypothetical protein | FAP39_17385 | Not Available | - | 3564629 - 3564813 | 6561.04 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.