Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hlyd family efflux transporter periplasmic adaptor subunit | FAP39_16240 | Not Available | + | 3324921 - 3326138 | 43221.9 |
| diacylglyceryl transferase | FAP39_16245 | Not Available | + | 3326378 - 3326878 | 19013.4 |
| pyrroline-5-carboxylate reductase | FAP39_16250 | Not Available | + | 3326909 - 3327724 | 27578.3 |
| pp_03210 | FAP39_16255 | Not Available | + | 3327717 - 3328055 | Not Available |
| d-glycerate dehydrogenase | FAP39_16260 | Not Available | + | 3328052 - 3329014 | 34058.4 |
| cupin domain-containing protein | FAP39_16265 | Not Available | + | 3329165 - 3329500 | 12199.5 |
| thymidine kinase | FAP39_16270 | Not Available | - | 3329530 - 3330117 | 21984.2 |
| hypothetical protein | FAP39_16275 | Not Available | + | 3330498 - 3330956 | 16432.4 |
| hypothetical protein | FAP39_16280 | Not Available | + | 3330960 - 3331700 | 28159.8 |
| hypothetical protein | FAP39_16285 | Not Available | - | 3331762 - 3332974 | 41209.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.