Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | FAP39_00065 | Not Available | + | 11512 - 12303 | 28161.8 |
| excinuclease abc subunit uvrc | FAP39_00070 | Not Available | + | 12586 - 14481 | 70180.3 |
| dead/deah box helicase | FAP39_00075 | Not Available | - | 14598 - 16601 | 72642.3 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | FAP39_00080 | Not Available | + | 16800 - 17459 | 24462.4 |
| molybdopterin converting factor subunit 1 | FAP39_00085 | Not Available | + | 17468 - 17713 | 9086.76 |
| molybdenum cofactor biosynthesis protein moae | FAP39_00090 | Not Available | + | 17715 - 18158 | 16564.7 |
| hypothetical protein | FAP39_00095 | Not Available | - | 18256 - 18579 | 12534.7 |
| bon domain-containing protein | FAP39_00100 | Not Available | - | 18566 - 20638 | 73005.0 |
| 4-hydroxybenzoate octaprenyltransferase | FAP39_00105 | Not Available | - | 20701 - 21762 | 39372.1 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | FAP39_00110 | Not Available | + | 21679 - 22404 | 26637.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.