Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Terminase large subunit | FAP39_09800 | Not Available | + | 1980867 - 1982741 | 69754.1 |
| hypothetical protein | FAP39_09805 | Not Available | + | 1982756 - 1982959 | 7352.61 |
| Putative portal protein | FAP39_09810 | Not Available | + | 1982956 - 1984518 | 56740.3 |
| Attr | Not Available | Not Available | + | 1984074 - 1984087 | Not Available |
| Prohead protease and major capsid protein | FAP39_09815 | Not Available | + | 1984565 - 1986739 | 77188.9 |
| Minor capsid protein | FAP39_09820 | Not Available | + | 1986854 - 1987189 | 11232.4 |
| Hypothetical protein | FAP39_15750 | Not Available | - | 3240753 - 3241385 | 22661.9 |
| hypothetical protein | FAP39_15755 | Not Available | - | 3241872 - 3242195 | 12040.4 |
| Major capsid protein | FAP39_15760 | Not Available | - | 3242195 - 3243217 | 37278.8 |
| Head decoration protein d | FAP39_15765 | Not Available | - | 3243290 - 3243670 | 12746.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.