Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_01870 | Not Available | + | 392555 - 392746 | 7295.86 |
| lysr family transcriptional regulator | FAP39_01875 | Not Available | - | 393622 - 394485 | 32394.0 |
| abc transporter atp-binding protein | FAP39_01880 | Not Available | + | 394594 - 395748 | 41477.7 |
| sugar abc transporter permease | FAP39_01885 | Not Available | + | 395750 - 396721 | 36147.8 |
| carbohydrate abc transporter permease | FAP39_01890 | Not Available | + | 396721 - 397683 | 35505.1 |
| abc transporter substrate-binding protein | FAP39_01895 | Not Available | + | 397806 - 399053 | 45377.3 |
| phosphodiesterase | FAP39_01900 | Not Available | + | 399116 - 399943 | 30469.1 |
| phosphodiesterase | FAP39_01905 | Not Available | + | 399940 - 400722 | 29014.2 |
| hypothetical protein | FAP39_01910 | Not Available | - | 401000 - 401791 | 26975.8 |
| metal abc transporter atp-binding protein | FAP39_01915 | Not Available | - | 401784 - 402539 | 26931.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.