Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent oxidoreductase | FAP39_01765 | Not Available | + | 373002 - 374366 | 48808.4 |
| duf2237 domain-containing protein | FAP39_01770 | Not Available | - | 374371 - 374751 | 13577.1 |
| serine hydrolase | FAP39_01775 | Not Available | - | 374818 - 375981 | 42297.5 |
| duf2332 family protein | FAP39_01780 | Not Available | - | 376035 - 377084 | 37994.3 |
| aminoacyl-trna hydrolase | FAP39_01785 | Not Available | - | 377081 - 377764 | 24572.5 |
| fkbm family methyltransferase | FAP39_01790 | Not Available | + | 377679 - 378533 | 31912.9 |
| 50s ribosomal protein l25/general stress protein ctc | FAP39_01795 | Not Available | - | 378589 - 379224 | 22835.2 |
| yjbq family protein | FAP39_01800 | Not Available | + | 379419 - 379838 | 15733.8 |
| transcriptional repressor nrdr | FAP39_01805 | Not Available | + | 380102 - 380569 | 17993.5 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | FAP39_01810 | Not Available | + | 380590 - 381675 | 37776.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.