Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ompa family protein | FAP39_01665 | Not Available | + | 355515 - 356108 | 21505.6 |
| hypothetical protein | FAP39_01670 | Not Available | + | 356121 - 356417 | 10440.6 |
| phoh family protein | FAP39_01675 | Not Available | + | 356563 - 357579 | 37144.1 |
| rrna maturation rnase ybey | FAP39_01680 | Not Available | + | 357625 - 358128 | 18358.4 |
| hlyc/corc family transporter | FAP39_01685 | Not Available | + | 358159 - 359043 | 32262.3 |
| apolipoprotein n-acyltransferase | FAP39_01690 | Not Available | + | 359036 - 360526 | 53085.3 |
| methionine adenosyltransferase | FAP39_01695 | Not Available | + | 360613 - 361794 | 42140.4 |
| bile acid:sodium symporter family protein | FAP39_01700 | Not Available | + | 361921 - 362781 | 29164.0 |
| trna (guanosine(46)-n7)-methyltransferase trmb | FAP39_01705 | Not Available | + | 362834 - 363547 | 27280.2 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | FAP39_01710 | Not Available | + | 363744 - 365096 | 46766.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.