Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| haloacid dehalogenase type ii | FAP39_01610 | Not Available | - | 344661 - 345347 | 24520.8 |
| peptidylprolyl isomerase | FAP39_01615 | Not Available | + | 345511 - 345939 | 14952.7 |
| nitronate monooxygenase | FAP39_01620 | Not Available | + | 346038 - 347099 | 36744.8 |
| enoyl-acp reductase | FAP39_01625 | Not Available | - | 347192 - 347983 | 28071.3 |
| beta-ketoacyl-acp synthase i | FAP39_01630 | Not Available | - | 347990 - 349219 | 42340.4 |
| bifunctional 3-hydroxydecanoyl-acp dehydratase/trans-2-decenoyl-acp isomerase | FAP39_01635 | Not Available | - | 349252 - 349761 | 18469.7 |
| transcriptional repressor | FAP39_01640 | Not Available | + | 349959 - 350375 | 15426.2 |
| nadph:quinone reductase | FAP39_01645 | Not Available | + | 350470 - 351456 | 33634.4 |
| phospholipase d family protein | FAP39_01650 | Not Available | - | 351463 - 353046 | 58937.0 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | FAP39_01660 | Not Available | + | 353969 - 355288 | 49102.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.