Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| set domain-containing protein | FAP39_01560 | Not Available | - | 335293 - 335718 | 15369.2 |
| zn-dependent alcohol dehydrogenase | FAP39_01565 | Not Available | - | 335836 - 336924 | 37261.4 |
| tcr/tet family mfs transporter | FAP39_01570 | Not Available | - | 337010 - 338212 | 42626.2 |
| adenylosuccinate lyase family protein | FAP39_01575 | Not Available | - | 338350 - 339705 | 47938.8 |
| alpha/beta fold hydrolase | FAP39_01580 | Not Available | - | 339708 - 340418 | 25942.1 |
| 3-oxoadipate enol-lactonase | FAP39_01585 | Not Available | - | 340411 - 341199 | 28399.2 |
| alpha-1,4 polygalactosaminidase | FAP39_01590 | Not Available | - | 341196 - 342395 | 44855.0 |
| phosphatase | FAP39_01595 | Not Available | - | 342392 - 342853 | 16175.6 |
| threonine/serine dehydratase | FAP39_01600 | Not Available | - | 342850 - 343824 | 33846.6 |
| alpha/beta hydrolase | FAP39_01605 | Not Available | - | 343821 - 344660 | 30308.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.