Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein tolq | FAP39_01460 | Not Available | + | 316401 - 317075 | 24369.5 |
| protein tolr | FAP39_01465 | Not Available | + | 317079 - 317558 | 16560.2 |
| energy transducer tonb | FAP39_01470 | Not Available | + | 317533 - 318633 | 38395.6 |
| tol-pal system protein tolb | FAP39_01475 | Not Available | + | 318630 - 319946 | 47537.4 |
| peptidoglycan-associated lipoprotein pal | FAP39_01480 | Not Available | + | 320022 - 320531 | 17751.8 |
| tetratricopeptide repeat protein | FAP39_01485 | Not Available | + | 320543 - 321388 | 29742.8 |
| trna lysidine(34) synthetase tils | FAP39_01490 | Not Available | + | 321393 - 322637 | 45432.3 |
| atp-dependent metallopeptidase ftsh/yme1/tma family protein | FAP39_01495 | Not Available | + | 322745 - 324658 | 68864.5 |
| methyltransferase domain-containing protein | FAP39_01500 | Not Available | + | 324655 - 325437 | 28686.1 |
| mosc domain-containing protein | FAP39_01505 | Not Available | + | 325462 - 326058 | 21604.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.