Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| multidrug transporter mate | FAP39_01410 | Not Available | + | 308839 - 310170 | 46525.0 |
| 50s ribosomal protein l11 methyltransferase | FAP39_01415 | Not Available | + | 310233 - 311102 | 30329.1 |
| hypothetical protein | FAP39_01420 | Not Available | + | 311210 - 311563 | 13221.1 |
| duf1127 domain-containing protein | FAP39_01425 | Not Available | - | 311751 - 311951 | 7264.48 |
| crossover junction endodeoxyribonuclease ruvc | FAP39_01430 | Not Available | + | 312277 - 312783 | 17657.5 |
| holliday junction branch migration protein ruva | FAP39_01435 | Not Available | + | 312780 - 313454 | 23260.3 |
| holliday junction branch migration dna helicase ruvb | FAP39_01440 | Not Available | + | 313458 - 314483 | 37509.1 |
| hypothetical protein | FAP39_01445 | Not Available | + | 314633 - 315268 | 23097.7 |
| rna 2',3'-cyclic phosphodiesterase | FAP39_01450 | Not Available | + | 315268 - 315843 | 20637.7 |
| tol-pal system-associated acyl-coa thioesterase | FAP39_01455 | Not Available | + | 315889 - 316278 | 14734.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.