Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Trna-ser | Not Available | Not Available | + | 287057 - 287146 | Not Available |
| sodium:proline symporter | FAP39_01315 | Not Available | + | 287885 - 289267 | 49416.0 |
| duf2478 domain-containing protein | FAP39_01320 | Not Available | - | 289303 - 289815 | 18112.7 |
| 4fe-4s ferredoxin | FAP39_01325 | Not Available | - | 289989 - 290630 | 24484.8 |
| nitrate reductase cytochrome c-type subunit | FAP39_01330 | Not Available | - | 290663 - 291106 | 16166.9 |
| quinol dehydrogenase ferredoxin subunit naph | FAP39_01335 | Not Available | - | 291129 - 292052 | 33966.7 |
| ferredoxin-type protein napg | FAP39_01340 | Not Available | - | 292052 - 292918 | 30744.7 |
| nitrate reductase catalytic subunit napa | FAP39_01345 | Not Available | - | 292950 - 295451 | 93621.8 |
| nitrate reductase | FAP39_01350 | Not Available | - | 295467 - 295733 | 9619.43 |
| ferredoxin-type protein napf | FAP39_01355 | Not Available | - | 295730 - 296236 | 17940.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.