Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_17390 | Not Available | - | 3565033 - 3565251 | 7494.78 |
| is3-like element isrosp1 family transposase | FAP39_17395 | Not Available | + | 3565845 - 3566428 | 22317.1 |
| transposase | FAP39_17400 | Not Available | - | 3566482 - 3567001 | 19680.5 |
| is256 family transposase | FAP39_17405 | Not Available | + | 3567002 - 3567521 | 19159.8 |
| hypothetical protein | FAP39_17410 | Not Available | + | 3567534 - 3568021 | 16826.0 |
| hypothetical protein | FAP39_17415 | Not Available | + | 3568068 - 3568346 | 9212.77 |
| site-specific integrase | FAP39_17420 | Not Available | + | 3568583 - 3568795 | 7661.33 |
| duf1013 domain-containing protein | FAP39_17425 | Not Available | - | 3569348 - 3569752 | 15283.3 |
| hypothetical protein | FAP39_17430 | Not Available | - | 3570136 - 3570498 | 12055.4 |
| is3 family transposase | FAP39_17435 | Not Available | - | 3570537 - 3570835 | 11583.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.