Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phage tail tape measure protein | FAP39_17280 | Not Available | - | 3548608 - 3550131 | 50520.6 |
| hypothetical protein | FAP39_17285 | Not Available | - | 3550240 - 3550881 | 24011.5 |
| helix-turn-helix transcriptional regulator | FAP39_17290 | Not Available | + | 3551040 - 3551252 | 7855.33 |
| hypothetical protein | FAP39_17295 | Not Available | + | 3551255 - 3551455 | 7260.6 |
| duf2163 domain-containing protein | FAP39_17300 | Not Available | + | 3551533 - 3552345 | 29395.9 |
| hypothetical protein | FAP39_17305 | Not Available | + | 3552407 - 3552655 | 8783.89 |
| crp/fnr family transcriptional regulator | FAP39_17315 | Not Available | - | 3553003 - 3553587 | 21209.3 |
| hypothetical protein | FAP39_17320 | Not Available | + | 3553668 - 3554213 | 19937.9 |
| hypothetical protein | FAP39_17325 | Not Available | - | 3554292 - 3554650 | 12991.3 |
| hypothetical protein | FAP39_17330 | Not Available | + | 3554844 - 3555524 | 25783.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.