Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_01260 | Not Available | + | 276243 - 276542 | 10840.2 |
| dna primase | FAP39_01265 | Not Available | + | 276622 - 278583 | 72454.7 |
| rna polymerase sigma factor rpod | FAP39_01270 | Not Available | + | 278699 - 280681 | 75306.4 |
| hypothetical protein | FAP39_01275 | Not Available | - | 280686 - 281531 | 31406.2 |
| hypothetical protein | FAP39_01280 | Not Available | + | 281640 - 282062 | 14824.6 |
| hypothetical protein | FAP39_01285 | Not Available | - | 282120 - 282737 | 23249.0 |
| alpha-hydroxy-acid oxidizing protein | FAP39_01290 | Not Available | - | 282804 - 283970 | 42550.1 |
| hypothetical protein | FAP39_01295 | Not Available | - | 284120 - 284821 | 24980.6 |
| tryptophan synthase subunit alpha | FAP39_01300 | Not Available | - | 284826 - 285617 | 27641.1 |
| redox-regulated atpase ychf | FAP39_01305 | Not Available | + | 285855 - 286952 | 39506.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.