Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | FAP39_17170 | Not Available | - | 3524628 - 3525086 | 16462.8 |
| hypothetical protein | FAP39_17175 | Not Available | - | 3525083 - 3526138 | 38049.1 |
| hypothetical protein | FAP39_17180 | Not Available | - | 3526135 - 3526560 | 14922.6 |
| abc transporter atp-binding protein | FAP39_17185 | Not Available | - | 3526608 - 3528272 | 60472.4 |
| hypothetical protein | FAP39_17190 | Not Available | - | 3528400 - 3528663 | 10283.4 |
| multicopper oxidase family protein | FAP39_17195 | Not Available | - | 3528854 - 3530173 | 48050.1 |
| copper-binding protein | FAP39_17200 | Not Available | - | 3530182 - 3531048 | 30268.3 |
| copper resistance protein copc | FAP39_17205 | Not Available | - | 3531051 - 3531392 | 12320.5 |
| cytochrome c | FAP39_17210 | Not Available | - | 3531404 - 3531745 | 12215.4 |
| sugar transferase | FAP39_17215 | Not Available | + | 3531756 - 3532209 | 17156.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.