Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system hipa family toxin | FAP39_17120 | Not Available | - | 3516845 - 3518152 | 46974.3 |
| helix-turn-helix transcriptional regulator | FAP39_17125 | Not Available | - | 3518149 - 3518439 | 10226.2 |
| flagellar hook-length control protein flik | FAP39_17130 | Not Available | - | 3518978 - 3520525 | 55429.7 |
| hypothetical protein | FAP39_17135 | Not Available | + | 3520624 - 3520908 | 9918.81 |
| hypothetical protein | FAP39_17140 | Not Available | + | 3520898 - 3521257 | 13412.3 |
| flagellin | FAP39_17145 | Not Available | + | 3521465 - 3522676 | 40411.7 |
| flagellar biosynthesis regulator flaf | FAP39_17150 | Not Available | + | 3522753 - 3523130 | 13955.7 |
| flagellar biosynthesis repressor flbt | FAP39_17155 | Not Available | + | 3523127 - 3523531 | 15181.5 |
| glycosyltransferase family 2 protein | FAP39_17160 | Not Available | - | 3523885 - 3524328 | 15851.8 |
| hypothetical protein | FAP39_17165 | Not Available | - | 3524321 - 3524650 | 12671.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.