Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| taxi family trap transporter solute-binding subunit | FAP39_16900 | Not Available | - | 3467425 - 3468402 | 33897.9 |
| n-formylglutamate deformylase | FAP39_16905 | Not Available | + | 3468487 - 3469317 | 30601.2 |
| formimidoylglutamate deiminase | FAP39_16910 | Not Available | + | 3469399 - 3470775 | 50594.6 |
| iclr family transcriptional regulator | FAP39_16915 | Not Available | + | 3470783 - 3471538 | 27768.3 |
| hypothetical protein | FAP39_16920 | Not Available | - | 3471743 - 3472885 | 43561.5 |
| hypothetical protein | FAP39_16925 | Not Available | - | 3473455 - 3474318 | 32277.5 |
| integrase | FAP39_16930 | Not Available | - | 3474677 - 3475696 | 39375.4 |
| hypothetical protein | FAP39_16935 | Not Available | - | 3475690 - 3475905 | 7842.3 |
| dna-binding protein | FAP39_16940 | Not Available | - | 3475902 - 3476108 | 7726.27 |
| helix-turn-helix transcriptional regulator | FAP39_16945 | Not Available | + | 3476199 - 3476606 | 15017.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.