Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose 3,5-epimerase | FAP39_16795 | Not Available | + | 3442271 - 3442813 | 20313.0 |
| class i sam-dependent methyltransferase | FAP39_16800 | Not Available | + | 3442810 - 3444030 | 44225.9 |
| nad(p)-dependent oxidoreductase | FAP39_16805 | Not Available | + | 3444027 - 3444860 | 30068.9 |
| methyltransferase domain-containing protein | FAP39_16810 | Not Available | + | 3444923 - 3445924 | 37095.8 |
| cephalosporin hydroxylase | FAP39_16815 | Not Available | + | 3445917 - 3446687 | 28858.5 |
| glycosyltransferase family 2 protein | FAP39_16820 | Not Available | - | 3446688 - 3447926 | 45775.1 |
| metallophosphoesterase | FAP39_16830 | Not Available | - | 3448721 - 3449656 | 34828.1 |
| exodeoxyribonuclease v subunit beta | FAP39_16835 | Not Available | - | 3449738 - 3452902 | 114478.0 |
| pd-(d/e)xk nuclease family protein | FAP39_16840 | Not Available | - | 3452895 - 3455612 | 98275.6 |
| adp-ribosyl-(dinitrogen reductase) hydrolase | FAP39_16845 | Not Available | + | 3455826 - 3457394 | 56089.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.