Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphatidylserine decarboxylase | FAP39_01205 | Not Available | - | 264011 - 264703 | 25187.8 |
| methionine--trna ligase | FAP39_01210 | Not Available | - | 264860 - 266572 | 63720.3 |
| mfs transporter | FAP39_01215 | Not Available | - | 266657 - 267925 | 44790.1 |
| agmatinase | FAP39_01220 | Not Available | + | 268101 - 269060 | 34378.5 |
| aldo/keto reductase | FAP39_01225 | Not Available | + | 269190 - 270233 | 38338.5 |
| hypothetical protein | FAP39_01230 | Not Available | + | 270411 - 270890 | 17172.3 |
| pilus assembly protein | FAP39_01235 | Not Available | - | 270887 - 271525 | 23722.5 |
| pilus assembly protein | FAP39_01240 | Not Available | - | 271440 - 271976 | 20267.5 |
| pilus assembly protein | FAP39_01245 | Not Available | - | 271973 - 273784 | 67574.7 |
| hypothetical protein | FAP39_01255 | Not Available | + | 275629 - 276117 | 17718.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.