Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease i | FAP39_16675 | Not Available | + | 3414068 - 3415468 | 52060.3 |
| type ii toxin-antitoxin system rele/pare family toxin | FAP39_16685 | Not Available | + | 3416254 - 3416583 | 12263.6 |
| transcriptional regulator | FAP39_16690 | Not Available | + | 3416585 - 3416914 | 12257.8 |
| class i sam-dependent dna methyltransferase | FAP39_16695 | Not Available | + | 3417060 - 3419834 | 103520.0 |
| dead/deah box helicase | FAP39_16700 | Not Available | + | 3419839 - 3421893 | 75421.2 |
| giy-yig nuclease family protein | FAP39_16705 | Not Available | + | 3421886 - 3423073 | 44888.4 |
| hypothetical protein | FAP39_16710 | Not Available | + | 3423078 - 3425732 | 97251.2 |
| duf4268 domain-containing protein | FAP39_16715 | Not Available | + | 3425810 - 3426358 | 21579.5 |
| hypothetical protein | FAP39_16720 | Not Available | - | 3426347 - 3426619 | 9547.49 |
| hypothetical protein | FAP39_16725 | Not Available | - | 3426528 - 3426785 | 9436.69 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.