Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome biogenesis protein ccmi | FAP39_16625 | Not Available | - | 3405212 - 3406369 | 41393.1 |
| cytochrome c-type biogenesis protein ccmh | FAP39_16630 | Not Available | - | 3406366 - 3406836 | 17389.5 |
| dsbe family thiol:disulfide interchange protein | FAP39_16635 | Not Available | - | 3406839 - 3407402 | 20066.1 |
| heme lyase ccmf/nrfe family subunit | FAP39_16640 | Not Available | - | 3407406 - 3409406 | 72916.6 |
| hypothetical protein | FAP39_16645 | Not Available | - | 3409476 - 3409697 | 8008.79 |
| hamp domain-containing protein | FAP39_16650 | Not Available | - | 3409816 - 3411201 | 51102.7 |
| response regulator | FAP39_16655 | Not Available | - | 3411198 - 3411920 | 26504.5 |
| calcium-binding protein | FAP39_16660 | Not Available | + | 3412253 - 3412735 | 17350.1 |
| rhodanese-like domain-containing protein | FAP39_16665 | Not Available | + | 3412960 - 3413430 | 16995.5 |
| hypothetical protein | FAP39_16670 | Not Available | + | 3413447 - 3413788 | 12047.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.