Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| multicopper oxidase family protein | FAP39_16575 | Not Available | - | 3394983 - 3396287 | 47504.5 |
| duf3047 domain-containing protein | FAP39_16580 | Not Available | - | 3396284 - 3396943 | 24211.4 |
| dsba family protein | FAP39_16585 | Not Available | - | 3396940 - 3397671 | 26737.9 |
| multicopper oxidase family protein | FAP39_16590 | Not Available | - | 3397697 - 3399094 | 51120.6 |
| cytochrome c | FAP39_16595 | Not Available | - | 3399151 - 3400050 | 32042.5 |
| cytochrome c | FAP39_16600 | Not Available | - | 3400052 - 3400642 | 19686.8 |
| cytochrome c | FAP39_16605 | Not Available | - | 3401038 - 3401496 | 16102.1 |
| l,d-transpeptidase | FAP39_16610 | Not Available | - | 3401529 - 3402110 | 21815.9 |
| duf2933 domain-containing protein | FAP39_16615 | Not Available | + | 3402274 - 3402591 | 10944.7 |
| copper-binding protein | FAP39_16620 | Not Available | + | 3402880 - 3405021 | 76029.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.